Chittaranjan Kole

Genome Mapping and Molecular Breeding in Plants presents the current status of the elucidation and improvement of plant genomes of economic interest. The focus is on genetic and physical mapping, positioning, cloning, monitoring of desirable genes by molecular breeding and the most recent advances in genomics. The series comprises seven volumes: Cereals and Millets; Oilseeds; Pulses, Sugar and Tuber Crops; Fruits and Nuts; Vegetables; Technical Crops; and Forest Trees. Vegetables contains reviews in 12 chapters contributed by 31 authors from 10 countries. Covered are tomato, lettuce, radish, carrot, beet, eggplant, cucurbits, onion, garlic and other crops included in Brassica rapa, Brassica oleracea, capsicums and cucurbits. The impressive work that has been done on most of these crops is presented in this volume. Genome projects already initiated on vegetable crops, particularly on Solanaceae and Brassicaceae species, may ignite further interest in other vegetables as well.

Vegetables

This book presents deliberations on molecular and genomic mechanisms underlying the interactions of crop plants to the abiotic stresses caused by heat, cold, drought, flooding, submergence, salinity, acidity, etc., important to develop resistant crop varieties. Knowledge on the advanced genetic and genomic crop improvement strategies including molecular breeding, transgenics, genomic-assisted breeding, and the recently emerging genome editing for developing resistant varieties in oilseed crops is imperative for addressing FHNEE (food, health, nutrition, energy, and environment) security. Whole genome sequencing of these crops followed by genotyping-by-sequencing has provided precise information regarding the genes conferring resistance useful for gene discovery, allele mining, and shuttle breeding which in turn opened up the scope for 'designing' crop genomes with resistance to abiotic stresses. The eight chapters each dedicated to a oilseed crop in this volume elucidate on different types of abiotic stresses and their effects on and interaction with the crop; enumerate on the available genetic diversity with regard to abiotic stress resistance among available cultivars; illuminate on the potential gene pools for utilization in interspecific gene transfer; present brief on classical genetics of stress resistance and traditional breeding for transferring them to their cultivated counterparts; depict the success stories of genetic engineering for developing abiotic stress-resistant crop varieties; discuss on molecular mapping of genes and QTLs underlying stress resistance and their marker-assisted introgression into elite varieties; enunciate on different genomics-aided techniques including genomic selection, allele mining, gene discovery, and gene pyramiding for developing adaptive crop varieties with higher quantity and quality of yields, and also elaborate some case studies on genome editing focusing on specific genes for generating abiotic stress-resistant crops.

Genomic Designing for Abiotic Stress Resistant Oilseed Crops

Ajit Kumar Shasany

This book provides an overview of the Ocimum genus from its genetic diversity to genome sequences, metabolites and their therapeutic utilities. Tulasi, Ocimum tenuiflorum, as a member of the family Lamiaceae, is a sacred plant in India. The plants of this genus Ocimum are collectively referred to as Basil and holy basil is worshipped in the Hindu religion. Basils are reservoirs of diverse terpenoids, phenylpropanoids and flavonoids, in addition to commercially important aromatic essential oils. In 2016, two working groups in India published the genome sequence in two different genotypes of Ocimum tenuiflorum. To help the readers understand the complexities of the genus and different chemotypes, this book accumulates all the available information on this medicinal plant including the genome. The complete knowledge may enable researchers to generate specific chemotypes in basil either through conventional breeding or development of transgenic lines. It also makes it possible to investigate the medicinal nature of holy basil compared to different species of the same genus.

The Ocimum Genome

Anil Kumar Singh

Kenta Shirasawa

This book deliberates on the concept, strategies, tools, and techniques of allele mining in fruit crops and its application potential in genome elucidation and improvement including studying allele evolution, discovery of superior alleles, discerning new haplotypes, assessment of intra- and interspecific similarity, and also studies of gene expression and gene prediction. Available gene pools in global germplasm collections specifically consisting of wild allied species and local landraces for almost all major crops have facilitated allele mining. Advanced genomic techniques have been developed including PCR-based allele priming and Eco-TILLING-based allele mining that are being widely used now for mining superior alleles. Allele discovery has become more relevant now for employing molecular breeding to develop designed crop varieties matching with consumer needs and also with genome plasticity to adapt the climate change scenarios. All these concepts and strategies along with precise success stories are presented over the chapters dedicated to the major fruit crops. The features of this book are as follows: The first book on the novel strategy of allele mining in fruit crops for precise breeding Presents genomic strategies of mining superior alleles underlying agronomic traits from genomic resources Depicts case studies of PCR-based allele priming and Eco-TILLING-based allele mining Elaborates on gene discovery and gene prediction in major fruit crops This book will be useful to students and faculties in various plant science disciplines including genetics, genomics, molecular breeding, agronomy, and bioinformatics; scientists in seed industries; and also policy makers and funding agencies interested in crop improvement.

Allele Mining for Genomic Designing of Fruit Crops

Part of the seven-volume series Genome Mapping and Molecular Breeding in Plants, this book covers Cereals and Millets, which provide staple food for most of the earth’s population. This book includes chapters on rice, wheat, maize, barley, oats, rye, sorghum, pearl millet, foxtail millet and finger millet. The emphasis is on advanced research on the major crops, including the model plants maize and rice, as well as on future road maps of genomic research for the less-often considered but equally deserving cereals and millets.

Cereals and Millets

Xiaowu Wang

This book provides insights into the latest achievements in genomics research on Brassica rapa. It describes the findings on this Brassica species, the first of the U’s triangle that has been sequenced and a close relative to the model plant Arabidopsis, which provide a basis for investigations of major Brassica crop species. Further, the book focuses on the development of tools to facilitate the transfer of our rich knowledge on Arabidopsis to a cultivated Brassica crop. Key topics covered include genomic resources, assembly tools, annotation of the genome, transposable elements, comparative genomics, evolution of Brassica genomes, and advances in the application of genomics in the breeding of Brassica rapa crops.

The Brassica rapa Genome

Sarah Williams-Blangero

Ravindranath Duggirala

Laura Almasy

Solomon F.D. Paul

This book provides an introduction to the latest gene mapping techniques and their applications in biomedical research and evolutionary biology. It especially highlights the advances made in large-scale genomic sequencing. Results of studies that illustrate how the new approaches have improved our understanding of the genetic basis of complex phenotypes including multifactorial diseases (e.g., cardiovascular disease, type 2 diabetes, and obesity), anatomic characteristics (e.g., the craniofacial complex), and neurological and behavioral phenotypes (e.g., human brain structure and nonhuman primate behavior) are presented. Topics covered include linkage and association methods, gene expression, copy number variation, next-generation sequencing, comparative genomics, population structure, and a discussion of the Human Genome Project. Further included are discussions of the use of statistical genetic and genetic epidemiologic techniques to decipher the genetic architecture of normal and disease-related complex phenotypes using data from both humans and non-human primates.

Genome Mapping and Genomics in Human and Non-Human Primates

Barbara E. Liedl

Joanne A. Labate

John R. Stommel

Ann Slade

This volume covers the advances in the study of tomato diversity and taxonomy. It examines the mapping of simple and complex traits, classical genetics and breeding, association studies, molecular breeding, positional cloning, and structural and comparative genomics. The contributors also discuss transcriptomics, proteomics, metabolomics, and bioinformatics. The information in this book will be useful to researchers working on other Solanaceaous crops as well as those interested in using the tomato as a model crop species.

Genetics, Genomics, and Breeding of Tomato

Byoung-Cheorl Kang

Peppers and eggplants are two leading vegetable crops produced and consumed worldwide. To facilitate the breeding for agronomical traits such as disease resistance and quality, diverse molecular genetic studies have been carried out. Recent achievements on pepper genome sequencing and trait-linked marker development have enabled the cloning of genes involved in useful traits. This book explores the agronomical and evolutionary characteristics of peppers and eggplants and the results of molecular genetic studies. Topics include molecular linkage maps and candidate gene approaches in capsicum and the structure of the pepper genome.

Genetics, Genomics and Breeding of Peppers and Eggplants

Forest trees cover one third of the global land surface, constitute many ecosystems, and play a pivotal role in the world economy. This volume details Populus trees, pines, Fagaceae trees, eucalypts, spruces, Douglas fir and black walnut, and offers a first-ever detailed review of Cryptomeria japonica. It thoroughly discusses innovative strategies to address the inherent problems of genome analysis of tree species.

Forest Trees

This book is the first comprehensive compilation of deliberations on botany, medicinal importance, genetic diversity, classical genetics and breeding, in vitro biosynthesis, somatic embryogenesis, genetic transformation, molecular mapping, genome sequence, and functional genomics of Catharanthus roseus. Catharanthus is the most important medicinal plant in the world that contains about 130 therapeutic alkaloids out of which vinblastine and vincristine are the two highly used anticancer drugs sold by the pharmaceutically industries. Altogether, the book contains about 10 chapters authored by globally reputed experts on the relevant field of this plant. This book is useful to the students, teachers and scientists in the academia and relevant private companies interested in horticulture, genetics, breeding, pathology, entomology, physiology, molecular genetics and breeding, in vitro culture and genetic engineering, and structural and functional genomics. This book is also useful to pharmaceutical industries.

The Catharanthus Genome

Jyoti Vakhlu

Sheetal Ambardar

Seyed Alireza Salami

This book is about Saffron (Crocus sativus L.) that is the most expensive spice in the world. Though there are other books on saffron but none of them has comprehensive information on saffron genome, transcriptome, proteome, metabolome and microbiome. The book has been divided into five sections and 17 chapters that cover all the areas related to its cultivation, market & economy, genomics, transcriptomics, proteomics, metabolomics, tissue culture, microbiomics, metagenomics etc. In addition a chapter on molecular markers and their use in molecular genetic mapping in saffron that lacks genetic diversity as a sterile plant paves a way for selection of elite varieties based on the epigenetic variability. A section on in-vitro propagation elaborates on the corm production under controlled conditions. In summary this book encompasses most of the information available on this golden spice

The Saffron Genome

Amita Pal

Malay Das

Liuyin Ma

This book entitled "Genetics, Genomics and Breeding of Bamboos" provides a comprehensive overview on the economically and ecologically important non-timber plant group bamboo. The book focuses on the most recent advances in bamboo research in diverse fields including botany, genetic resources, traditional and molecular breeding, disease and pest resistance, tissue culture and genetic transformation and genomics perspective. The different chapters are authored by internationally reputed experts on this plant and is a good source of information for students, scientists, farmers, and bamboo resource management advisers on this plant, which is gaining increase importance on international commerce.

Genetics, Genomics and Breeding of Bamboos

Hongmei Miao

Haiyang Zhang

This book is the first comprehensive compilation of deliberations on whole genome sequencing of sesame including genome assembly, annotation, structure and synteny analysis, and sequencing of its chloroplast genome and also its wild species. It presents narratives on classical genetics and breeding, tissue culture and genetic transformation, molecular mapping and breeding. Other chapters describe the beneficial components in sesame protein and oil, botanical depictions and cytological features. Prospects of designed breeding in the post-genomics era including gene discovery have also been enumerated. Altogether, the book contains 19 chapters authored by globally reputed experts on the relevant field in this crop. This book is useful to the students, teachers, and scientists in the academia and relevant private companies interested in classical and molecular genetics, biotechnology, breeding, biochemistry, traditional and molecular breeding, and structural and evolutionary genomics. The work is also useful to seed and oil industries.

The Sesame Genome

Biotic stresses cause yield loss of 31-42% in crops in addition to 6-20% during post-harvest stage. Understanding interaction of crop plants to the biotic stresses caused by insects, bacteria, fungi, viruses, and oomycetes, etc. is important to develop resistant crop varieties. Knowledge on the advanced genetic and genomic crop improvement strategies including molecular breeding, transgenics, genomic-assisted breeding and the recently emerging genome editing for developing resistant varieties in technical crops is imperative for addressing FHEE (food, health, energy and environment) security. Whole genome sequencing of these crops followed by genotyping-by-sequencing have facilitated precise information about the genes conferring resistance useful for gene discovery, allele mining and shuttle breeding which in turn opened up the scope for 'designing' crop genomes with resistance to biotic stresses. The 15 chapters dedicated to 13 technical crops and 2 technical crop groups in this volume will deliberate on different types of biotic stress agents and their effects on and interaction with crop plants; will enumerate on the available genetic diversity with regard to biotic stress resistance among available cultivars; illuminate on the potential gene pools for utilization in interspecific gene transfer; will brief on the classical genetics of stress resistance and traditional breeding for transferring them to their cultivated counterparts; will enunciate the success stories of genetic engineering for developing biotic stress resistant varieties; will discuss on molecular mapping of genes and QTLs underlying biotic stress resistance and their marker-assisted introgression into elite varieties; will enunciate on different emerging genomics-aided techniques including genomic selection, allele mining, gene discovery and gene pyramiding for developing resistant crop varieties with higher quantity and quality; and will also elaborate some case studies on genome editing focusing on specific genes for generating disease and insect resistant crops.

Genomic Designing for Biotic Stress Resistant Technical Crops

This book describes the concepts, strategies and techniques for pulse-crop improvement in the era of climate change, highlighting the latest advances in plant molecular mapping and genome sequencing. Genetic mapping of genes and QTLs has broadened the scope of marker-assisted breeding and map-based cloning in almost all major pulse crops. Genetic transformation, particularly using alien genes conferring resistance to herbicide, insects and diseases has facilitated the development of a huge number of genetically modified varieties of the major pulse crops. Since the genome sequencing of rice in 2002, genomes of over 7 pulse crops have been sequenced. This has resulted in the possibility of deciphering the exact nucleotide sequence and chromosomal positions of agroeconomic genes. Most importantly, comparative genomics and genotyping-by-sequencing has opened up a new vista for exploring wild crop relatives for identification of useful donor genes.

Genomic Designing of Climate-Smart Pulse Crops

This book highlights modern strategies and methods to improve oilseed crops in the era of climate change, presenting the latest advances in plant molecular breeding and genomics-driven breeding. Spectacular achievements in the fields of molecular breeding, transgenics and genomics in the last three decades have facilitated revolutionary changes in oilseed- crop-improvement strategies and techniques. Since the genome sequencing of rice, as the first crop plant, in 2002, the genomes of about one dozen oilseed crops have been sequenced and more are to follow. This has made it possible to decipher the exact nucleotide sequence and chromosomal positions of agroeconomic genes. Most importantly, comparative genomics and genotyping-by-sequencing have opened up new vistas for exploring available biodiversity, particularly of wild crop relatives, for identifying useful donor genes.

Genomic Designing of Climate-Smart Oilseed Crops

This edited book provides a comprehensive overview of modern strategies in fruit crop breeding in the era of climate change and global warming. It demonstrates how advances in plant molecular and genomics-assisted breeding can be utilized to produce improved fruit crops with climate-smart traits. Agriculture is facing a number of challenges in the 21st century, as it has to address food, nutritional, energy and environmental security. Future fruit varieties must be adaptive to the varying scenarios of climate change, produce higher yields of high-quality food, feed, and fuel and have multiple uses. To achieve these goals, it is imperative to employ modern tools of molecular breeding, genetic engineering and genomics for ‘precise’ plant breeding to produce ‘designed’ fruit crop varieties. This book is of interest to scientists working in the fields of plant genetics, genomics, breeding, biotechnology, and in the disciplines of agronomy and horticulture.

Genomic Designing of Climate-Smart Fruit Crops

This book highlights modern methods and strategies to improve cereal crops in the era of climate change, presenting the latest advances in plant molecular mapping and genome sequencing. Spectacular achievements in the fields of molecular breeding, transgenics and genomics in the last three decades have facilitated revolutionary changes in cereal- crop-improvement strategies and techniques. Since the genome sequencing of rice in 2002, the genomes of over eight cereal crops have been sequenced and more are to follow. This has made it possible to decipher the exact nucleotide sequence and chromosomal positions of agroeconomic genes. Most importantly, comparative genomics and genotyping-by-sequencing have opened up new vistas for exploring available biodiversity, particularly of wild crop relatives, for identifying useful donor genes.

Genomic Designing of Climate-Smart Cereal Crops

Kevin M. Folta

Recent interest in the health-related, culinary, and biological properties of berries is stimulating new initiatives in berry breeding and production. Breakthroughs in molecular technologies allow genomics-enabled approaches to augment research efforts. This volume documents the basic botany and culture of four major berry crops and follows the scientific milestones that have ushered these systems into the modern genomics era. Leading researchers in each crop system detail the recent findings in genetics, genomics, and breeding that seek to improve sustainable cultivation, fruit quality, and availability.

Chittaranjan Kole

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